Index

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__compare_and_cut() (in module repytah.assemble) __create_anno_remove_overlaps() (in module repytah.transform) __find_add_rows() (in module repytah.search) __find_song_pattern() (in module repytah.utilities)

__inds_to_rows() (in module repytah.assemble) __merge_based_on_length() (in module repytah.assemble) __merge_rows() (in module repytah.assemble) __num_of_parts() (in module repytah.assemble) __separate_anno_markers() (in module repytah.transform)

A

add_annotations() built-in function

add_annotations() (in module repytah.utilities)

B

breakup_overlaps_by_intersect() built-in function breakup_overlaps_by_intersect() (in module repytah.assemble) built-in function add_annotations() breakup_overlaps_by_intersect() check_overlaps() create_sdm() find_all_repeats() find_complete_list() find_complete_list_anno_only() find_initial_repeats() get_annotation_lst() get_y_labels() hierarchical_structure() reconstruct_full_block() reformat() remove_overlaps() stretch_diags()

C

check_overlaps() built-in function check_overlaps() (in module repytah.assemble)

create_sdm() built-in function create_sdm() (in module repytah.utilities)

F

find_all_repeats() built-in function find_all_repeats() (in module repytah.search) find_complete_list() built-in function find_complete_list() (in module repytah.search)

find_complete_list_anno_only() built-in function find_complete_list_anno_only() (in module repytah.search) find_initial_repeats() built-in function find_initial_repeats() (in module repytah.utilities)

G

get_annotation_lst() built-in function get_annotation_lst() (in module repytah.utilities)

get_y_labels() built-in function get_y_labels() (in module repytah.utilities)

H

hierarchical_structure() built-in function

hierarchical_structure() (in module repytah.assemble)

M

module repytah.assemble repytah.search repytah.transform repytah.utilities

R

reconstruct_full_block() built-in function reconstruct_full_block() (in module repytah.utilities) reformat() built-in function reformat() (in module repytah.utilities) remove_overlaps() built-in function

remove_overlaps() (in module repytah.transform) repytah.assemble module repytah.search module repytah.transform module repytah.utilities module

S

stretch_diags() built-in function

stretch_diags() (in module repytah.utilities)